A - Ч in Macedonia, the former Yugoslav Republic of
S
- S'lp
- Samokov, Opština Samokov
- Saraj
- Sarakino
- Saramzalino
- Sarandinovo
- Saždevo
- Sedlarevo
- Sekirani
- Sekirci
- Sekirnik
- Selce, Macedonia, the former Yugoslav Republic of
- Semenište
- Senokos
- Sirkovo
- Skačinci
- Skopje
- Sladuevo
- Slansko
- Slatina, Macedonia, the former Yugoslav Republic of
- Slatino
- Slavej
- Slepče
- Slepče, Macedonia, the former Yugoslav Republic of
- Slivje
- Slivnica
- Slivnik
- Sloeštica
- Slupčane
- Smesnica
- Smilevo
- Smilovci
- Smolari
- Sogle
- Sojaklari
- Sopot, Macedonia, the former Yugoslav Republic of
- Sopotnica
- Srbica
- Srbinovo
- Sredno Konjari
- Sredorek
- Srpci
- Stanica Zelenikovo
- Stanjevci
- Star Dojran
- Star Istevnik
- Staravina
- Stari Grad, Macedonia, the former Yugoslav Republic of
- Stari Karaorman
- Staro Konjarevo
- Staro Lagovo
- Staro Selo, Macedonia, the former Yugoslav Republic of
- Staro Zmirnovo
- Staroec
- Stenče
- Stepanci
- Stojakovo
- Strahojadica
- Strajane
- Strelci
- Streževo
- Strimnica
- Strovija
- Struga
- Strugovo
- Strumica
- Sušica, Macedonia, the former Yugoslav Republic of
- Sušica
- Suvo Grlo
- Suvodol, Macedonia, the former Yugoslav Republic of
- Suvodol
- Sveta
- Sveta Petka
- Sveto Mitrani
- Sveto Todori
- Svinište
- Sveti Nikole